Arcady R Mushegian: search on Z-Library

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1

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018)

King, Andrew M. Q., Lefkowitz, Elliot J., Mushegian, Arcady R., Adams, Michael J., Dutilh, Bas E., Gorbalenya, Alexander E., Harrach, Balázs, Harrison, Robert L., Junglen, Sandra, Knowles, Nick J., Kr

Journal:

Archives of Virology

Year:

2018

Language:

english

File:

PDF, 1.21 MB

english, 2018

2

The minimal genome concept

Arcady Mushegian

Journal:

Current Opinion in Genetics & Development

Year:

1999

Language:

english

File:

PDF, 93 KB

english, 1999

3

Gene content of LUCA, the last universal common ancestor

Mushegian, Arcady

Journal:

Frontiers in Bioscience

Year:

2008

Language:

english

File:

PDF, 339 KB

english, 2008

4

Distinct Circular Single-Stranded DNA Viruses Exist in Different Soil Types

Reavy, Brian, Swanson, Maud M., Cock, Peter J. A., Dawson, Lorna, Freitag, Thomas E., Singh, Brajesh K., Torrance, Lesley, Mushegian, Arcady R., Taliansky, Michael, Pettinari, M. J.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

5

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

Eugene V. Koonin, Arcady R. Mushegian, Michael Y. Galperin, D. Roland Walker

Journal:

Molecular Microbiology

Year:

1997

Language:

english

File:

PDF, 1.22 MB

english, 1997

6

Genome of Xanthomonas oryzae Bacteriophage Xp10: An Odd T-Odd Phage

Julia Yuzenkova, Sergei Nechaev, Jana Berlin, Dragana Rogulja, Konstantin Kuznedelov, Ross Inman, Arcady Mushegian, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.92 MB

english, 2003

7

New dimensions of the virus world discovered through metagenomics

David M. Kristensen, Arcady R. Mushegian, Valerian V. Dolja, Eugene V. Koonin

Journal:

Trends in Microbiology

Year:

2010

Language:

english

File:

PDF, 648 KB

english, 2010

8

SHORT INTEGUMENTS1/SUSPENSOR1/CARPEL FACTORY, a Dicer Homolog, Is a Maternal Effect Gene Required for Embryo Development in Arabidopsis

Teresa A. Golden, Stephen E. Schauer, Jean D. Lang, Stéphane Pien, Arcady R. Mushegian, Ueli Grossniklaus, David W. Meinke and Animesh Ray

Journal:

PLANT PHYSIOLOGY

Year:

2002

Language:

english

File:

PDF, 3.04 MB

english, 2002

9

Reply to Kyrpides and Ouzounis

Arcady R. Mushegian

Journal:

Molecular Microbiology

Year:

2000

File:

PDF, 334 KB

2000

10

Natural history ofS-adenosylmethionine-binding proteins

Piotr Z Kozbial, Arcady R Mushegian

Journal:

BMC Structural Biology

Year:

2005

Language:

english

File:

PDF, 2.10 MB

english, 2005

11

Unexpected sequence similarity between nucleosidases and phosphoribosyltransferases of different specificity

Arcady R. Mushegian, Eugene V. Koonin

Journal:

Protein Science

Year:

1994

Language:

english

File:

PDF, 1.92 MB

english, 1994

12

Eukaryotic translation elongation factor 1γ contains a glutathione transferase domain—Study of a diverse, ancient protein super family using motif search and structural modeling

Eugene V. Koonin, Roman L. Tatusov, Stephen F. Altschul, Stephen H. Bryant, Arcady R. Mushegian, Peer Bork, Alfonso Valencia

Journal:

Protein Science

Year:

1994

Language:

english

File:

PDF, 4.41 MB

english, 1994

13

A putative FAD-binding domain in a distinct group of oxidases including a protein involved in plant development

Arcady R. Mushegian, Eugene V. Koonin

Journal:

Protein Science

Year:

1995

Language:

english

File:

PDF, 248 KB

english, 1995

14

Refining structural and functional predictions for secretasome components by comparative sequence analysis

Arcady Mushegian

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2002

Language:

english

File:

PDF, 723 KB

english, 2002

15

Response

Arcady R. Mushegian, Eugene V. Koonin

Journal:

Journal of Molecular Evolution

Year:

1997

Language:

english

File:

PDF, 763 KB

english, 1997

16

Molecular dissection of arginyltransferases guided by similarity to bacterial peptidoglycan synthases

Rai, Reena, Mushegian, Arcady, Makarova, Kira, Kashina, Anna

Journal:

Year:

2006

Language:

english

File:

PDF, 1.37 MB

english, 2006

17

Organization of the 3′-Terminal Half of Beet Yellow Stunt Virus Genome and Implications for the Evolution of Closteroviruses

Alexander V. Karasev, Olga V. Nikolaeva, Arcady R. Mushegian, Richard F. Lee, William O. Dawson

Journal:

Year:

1996

Language:

english

File:

PDF, 161 KB

english, 1996

18

Gene order is not conserved in bacterial evolution

Arcady R. Mushegian, Eugene V. Koonin

Journal:

Trends in Genetics

Year:

1996

Language:

english

File:

PDF, 220 KB

english, 1996

19

G protein-coupled receptor kinases: More than just kinases and not only for GPCRs

Eugenia V. Gurevich, John J.G. Tesmer, Arcady Mushegian, Vsevolod V. Gurevich

Journal:

Pharmacology & Therapeutics

Year:

2012

Language:

english

File:

PDF, 1.60 MB

english, 2012

20

Sequence–function analysis of the Sendai virus L protein domain VI

Andrea M. Murphy, Megan Moerdyk-Schauwecker, Arcady Mushegian, Valery Z. Grdzelishvili

Journal:

Year:

2010

Language:

english

File:

PDF, 2.57 MB

english, 2010

21

Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli

Roman L. Tatusov, Arcady R. Mushegian, Peer Bork, Nigel P. Brown, William S. Hayes, Mark Borodovsky, Kenneth E. Rudd, Eugene V. Koonin

Journal:

Current Biology

Year:

1996

Language:

english

File:

PDF, 348 KB

english, 1996

22

Sequencing and analysis of bacterial genomes

Eugene V. Koonin, Arcady R. Mushegian, Kenneth E. Rudd

Journal:

Current Biology

Year:

1996

Language:

english

File:

PDF, 337 KB

english, 1996

23

The Drosophila Beat protein is related to adhesion proteins that contain immunoglobulin domains

Arcady R Mushegian

Journal:

Current Biology

Year:

1997

Language:

english

File:

PDF, 82 KB

english, 1997

24

A putative nucleic acid-binding domain in Bloom's and Werner's syndrome helicases

Vladimir Morozov, Arcady R. Mushegian, Eugene V. Koonin, Peer Bork

Journal:

Trends in Biochemical Sciences

Year:

1997

Language:

english

File:

PDF, 366 KB

english, 1997

25

A topological algorithm for identification of structural domains of proteins

Frank Emmert-Streib, Arcady Mushegian

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 905 KB

english, 2007

26

The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms

Jessica Rennert, James A Coffman, Arcady R Mushegian, Anthony J Robertson

Journal:

BMC Evolutionary Biology

Year:

2003

Language:

english

File:

PDF, 361 KB

english, 2003

27

Measuring gene expression divergence: the distance to keep

Galina Glazko, Arcady Mushegian

Journal:

Year:

2010

Language:

english

File:

PDF, 1.30 MB

english, 2010

28

Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep

Francesco Smedile, Enzo Messina, Violetta La Cono, Olga Tsoy, Luis S. Monticelli, Mireno Borghini, Laura Giuliano, Peter N. Golyshin, Arcady Mushegian, Michail M. Yakimov

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 1.47 MB

english, 2012

29

The SPO1 gene product required for meiosis in yeast has a high similarity to phospholipase B enzymes

Gela G Tevzadze, Arcady R Mushegian, Rochelle Easton Esposito

Journal:

Year:

1996

Language:

english

File:

PDF, 271 KB

english, 1996

30

The ATAC Acetyltransferase Complex Coordinates MAP Kinases to Regulate JNK Target Genes

Tamaki Suganuma, Arcady Mushegian, Selene K. Swanson, Susan M. Abmayr, Laurence Florens, Michael P. Washburn, Jerry L. Workman

Journal:

Year:

2010

Language:

english

File:

PDF, 1.71 MB

english, 2010

31

Genome Sequence and Gene Expression of Bacillus anthracis Bacteriophage Fah

Leonid Minakhin, Ekaterina Semenova, Jing Liu, Anatoly Vasilov, Elena Severinova, Tarasii Gabisonia, Ross Inman, Arcady Mushegian, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1022 KB

english, 2005

32

Thermus thermophilus Bacteriophage ϕYS40 Genome and Proteomic Characterization of Virions

Tatyana Naryshkina, Jing Liu, Laurence Florens, Selene K. Swanson, Andrey R. Pavlov, Nadejda V. Pavlova, Ross Inman, Leonid Minakhin, Sergei A. Kozyavkin, Michael Washburn, Arcady Mushegian, Konstanti

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 2.43 MB

english, 2006

33

Protein repertoire of double-stranded DNA bacteriophages

Jing Liu, Galina Glazko, Arcady Mushegian

Journal:

Year:

2006

Language:

english

File:

PDF, 353 KB

english, 2006

34

Intermediary metabolism in sea urchin: The first inferences from the genome sequence

Manisha Goel, Arcady Mushegian

Journal:

Developmental Biology

Year:

2006

Language:

english

File:

PDF, 472 KB

english, 2006

35

The sea urchin kinome: A first look

Cynthia A. Bradham, Kathy R. Foltz, Wendy S. Beane, Maria I. Arnone, Francesca Rizzo, James A. Coffman, Arcady Mushegian, Manisha Goel, Julia Morales, Anne-Marie Geneviere, François Lapraz, Anthony J.

Journal:

Developmental Biology

Year:

2006

Language:

english

File:

PDF, 1.65 MB

english, 2006

36

2DE identification of proteins exhibiting turnover and phosphorylation dynamics during sea urchin egg activation

Michelle M. Roux, Monte J. Radeke, Manisha Goel, Arcady Mushegian, Kathy R. Foltz

Journal:

Developmental Biology

Year:

2008

Language:

english

File:

PDF, 1.11 MB

english, 2008

37

Complete genome sequences of cellular life forms: glimpses of theoretical evolutionary genomics

Eugene V Koonin, Arcady R Mushegian

Journal:

Current Opinion in Genetics & Development

Year:

1996

Language:

english

File:

PDF, 994 KB

english, 1996

38

Three monophyletic superfamilies account for the majority of the known glycosyltransferases

Jing Liu, Arcady Mushegian

Journal:

Protein Science

Year:

2003

Language:

english

File:

PDF, 4.27 MB

english, 2003

39

Chalcone isomerase family and fold: No longer unique to plants

Michael Gensheimer, Arcady Mushegian

Journal:

Protein Science

Year:

2004

Language:

english

File:

PDF, 472 KB

english, 2004

40

Similarity searches in genome-wide numerical data sets

Galina Glazko, Michael Coleman, Arcady Mushegian

Journal:

Year:

2006

Language:

english

File:

PDF, 1.44 MB

english, 2006

41

A family of GFP-like proteins with different spectral properties in lanceletBranchiostoma floridae

Diana Baumann, Malcolm Cook, Limei Ma, Arcady Mushegian, Erik Sanders, Joel Schwartz, C Ron Yu

Journal:

Year:

2008

Language:

english

File:

PDF, 520 KB

english, 2008

42

Evolutionary history of bacteriophages with double-stranded DNA genomes

Galina Glazko, Vladimir Makarenkov, Jing Liu, Arcady Mushegian

Journal:

Year:

2007

Language:

english

File:

PDF, 1.48 MB

english, 2007

43

NleB, a Bacterial Effector with Glycosyltransferase Activity, Targets GAPDH Function to Inhibit NF-κB Activation

Gao, Xiaofei, Wang, Xiaogang, Pham, Thanh H., Feuerbacher, Leigh Ann, Lubos, Marie-Luise, Huang, Minzhao, Olsen, Rachel, Mushegian, Arcady, Slawson, Chad, Hardwidge, Philip R.

Journal:

Cell Host & Microbe

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

44

Systems biology of bacteriophage proteins and new dimensions of the virus world discovered through metagenomics

David M Kristensen, Arcady R Mushegian, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

45

Systems biology of bacteriophage proteins and new dimensions of the virus world discovered through metagenomics

David M Kristensen, Arcady R Mushegian, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

46

Models of gene gain and gene loss for probabilistic reconstruction of gene content in the last universal common ancestor of life

Kannan, Lavanya, Li, Hua, Rubinstein, Boris, Mushegian, Arcady

Journal:

Year:

2013

Language:

english

File:

PDF, 303 KB

english, 2013

47

NleB, a Bacterial Effector with Glycosyltransferase Activity, Targets GAPDH Function to Inhibit NF-κB Activation

Gao, Xiaofei, Wang, Xiaogang, Pham, Thanh H., Feuerbacher, Leigh Ann, Lubos, Marie-Luise, Huang, Minzhao, Olsen, Rachel, Mushegian, Arcady, Slawson, Chad, Hardwidge, Philip R.

Journal:

Cell Host & Microbe

Year:

2013

Language:

english

File:

PDF, 263 KB

english, 2013

48

A Family of Lysozyme-Like Virulence Factors in Bacterial Pathogens of Plants and Animals

Arcady R. Mushegian, Karla Jean Fullner, Eugene V. Koonin and Eugene W. Nester

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.13 MB

english, 1996

49

A Minimal Gene Set for Cellular Life Derived by Comparison of Complete Bacterial Genomes

Arcady R. Mushegian and Eugene V. Koonin

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 2.01 MB

english, 1996

50

Large-Scale Isolation of Candidate Virulence Genes of Pseudomonas aeruginosa by in vivo Selection

Jingyi Wang, Arcady Mushegian, Stephen Lory and Shouguang Jin

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.91 MB

english, 1996